Allen brain reference atlas. A Forum post About Neuroscience at the Allen Institute.

In 2021, we launched the Allen Institute Jan 10, 2024 · April 10, 2024. Only the coronal gene expression data were used to construct this application. Key features . brain-map. Feb 1, 2024 · The 2D coronal reference atlas is annotated on Nissl sections from a 34-year-old female based on a modified Brodmann nomenclature. The IAV is a stand alone application that can be used to explore neuroanatomy. The Allen Brain Atlas API now offers access to our online data from across the suite of Allen Brain Atlas resources. The atlas includes 141 brain regions spanning the complete volume of the MRI reference brain “ICBM 2009b Nonlinear Symmetric”, a non-linear average of the MNI152 database of 152 normal brain images. Key features include an “all genes, all structures” RNA microarray survey that is spatially mapped to an MRI reference space, in situ hybridization image data at cellular resolution for selected genes in targeted brain regions, and an annotated human Microarray ISH Data MRI Download Brain Explorer Documentation Help. Search. Key features: In situ hybridization image data with cellular-level resolution. With the The Allen Brain Atlas is a repository of neuroanatomical data concerning the mouse brain. 4 - 3. Explore the structure and function of the mouse brain with the Interactive Atlas Viewer, a tool that integrates multiple data types and atlases from the Allen Brain Atlas project. Annotations (Reference) Selection Color; Outlines; 15 pcw, Whole Brain; Neuroanatomical Guides; Human Brain Atlas Guide Sep 16, 2016 · The Allen Human Brain Reference Atlas is the most structurally complete map of the human brain to date. , 2012 ). Using multimodal reference data, the entire brain parcellated directly in 3D, labeling every voxel with a brain Mar 21, 2024 · The ABC Atlas aims to empower researchers worldwide to explore and analyze multiple whole-brain datasets simultaneously. The Brain Explorer 2 software is a desktop application for viewing the Allen Mouse Brain Atlas gene expression data in the framework of the Allen Reference Atlas (ARA). Our focus on neuroscience began with the launch of the Allen Institute for Brain Science in 2003, which led to the creation of the widely-used Allen Brain Atlases. Using the Brain Explorer 2 software, you can: View a fully interactive version of the Allen Human Brain Atlas in 3-D. Dec 8, 2023 · Experimental Overview And Metadata Informatics Data Processing 3-D Reference Models Image Alignment Expression Detection Expression Gridding Structure Unionization Expression Grid Search Service The Allen Mouse Brain Atlas provides genome-wide in situ hybridization (ISH) image data for approximately 20,000 genes in adult mice. Select Cell Features. et al. BrainSpan - Downloading Data. , Editor-in-Chief of the Journal of Comparative Neurology and a participant in the project. Image processing is performed in the Allen Mouse Common Coordinate Framework (CCF v3) using the Allen Mouse Brain Reference Atlas, ARA 3. This volume is a new, standard, full-colour, high-resolution brain atlas of C57BL/6J male mouse whose extensive images are enhanced by a hierarchically organized taxonomy of mouse brain structure. A. Feb 2, 2024 · The Allen Developing Mouse Brain Reference Atlases were designed to: Allow users to directly compare gene expression patterns to an annotated developmental atlas; Provide templates for the creation of 3-D computer models of the developing mouse brain; Serve as a neuroanatomical foundation for informatics-based analysis tools. Adult Mouse Reference Atlas from the Allen Institute. Beta version. Google Scholar Ma, Y. The Allen Human Brain Atlas is a unique multi-modal atlas of the human brain, integrating anatomic and genomic information and coupled with a suite of visualization and data mining tools. For more information, please refer to the documentation . January 5, 2024. 2) Provide templates for the creation of 3D computer models of the developing mouse brain. These parcellations were drawn on the MRI reference brain volume “ICBM ISH Data: Reference Atlas: AGEA: Brain Explorer: Related Studies Sleep; Mouse Strains; Documentation: Help Sep 19, 2012 · All of these data are linked with the other databases available via the Allen Brain Atlas data portal producing a reference annotation for ENCODE. Apr 2, 2014 · The Allen Reference Atlas: a Digital Color Brain Atlas of the C57BL/6J Male Mouse (John Wiley & Sons, 2008) Google Scholar Markov, N. Although the original Allen Mouse Brain Atlas API is still available, the latest 3-D grid-level expression summaries, reference atlas, and services for the Mouse Brain Atlas are available via the Allen Brain Atlas API. The Allen Reference Atlas: A Digital Color Brain Atlas Jan 8, 2024 · Atlas Drawing and Ontologies. Compare with other reference atlases and datasets. Using multimodal reference data, we parcellated the entire brain directly in 3D, labeling every voxel with a brain structure spanning Jan 1, 2008 · Two columns each show six comparable atlas levels (from rostral at top to caudal at bottom) and their corresponding Nissl cytoarchitecture, adapted from two widely used brain reference atlases Dec 8, 2023 · This coronal reference atlas is created from a 3-D volumetric reference atlas, annotated symmetrically using an average of data merged from 1,675 brain specimens. Link to associated gene metadata on the Allen Mouse May 5, 2020 · The CCFv3 reference brain is a 3D spatial template constructed as a population average of 1,675 young adult mouse brains imaged using serial two photon tomography (STPT) for the Allen Mouse Brain Connectivity Atlas ( Kuan et al. It provides unprecedented insights into the diversity of cell types and their location. Key features: Jan 5, 2024 · Using the Interactive Atlas Viewer. 2. Both datasets are also available Allen Brain Cell Atlas. The BrainSpan atlas was developed by a consortium consisting of the Allen Institute for Brain Science; Yale University (Nenad Sestan, Mark B. A high-resolution map of neural connections in the mouse brain, built on an array of transgenic mice genetically engineered to target specific cell types . In 2021, we launched the Allen Institute for Neural Dynamics, a neuroscience division Sep 15, 2018 · The Human Brain Reference Atlas was supported by Award Numbers RC2MH089921 (PIs: Ed Lein & Michael Hawrylycz, Allen Institute for Brain Science), RC2MH090047 (PI: James A. Using Brain Explorer, you can: • View a fully interactive version of the Allen Reference Atlas in 3-D. In this way, this atlas acts not only as a key companion to the Allen Reference Atlas but also as a harbinger of things to come. Brain Explorer® 3-D Viewer is an application for viewing brain anatomy and gene expression data in three dimensions in the framework of the Allen Reference Atlas. It provides spatial context and a common coordinate framework for mapping data in the Allen Mouse Connectivity Atlas, the Allen Cell Types Database (mouse), and the Allen Brain Our focus on neuroscience began with the launch of the Allen Institute for Brain Science in 2003, which led to the creation of the widely-used Allen Brain Atlases. Genome Biol. The Allen Mouse Brain Atlas is a three-dimensional atlas of gene expression throughout the adult mouse brain. Human experts manually registered the brain sections Allen Mouse Brain Common Coordinate Framework (CCFv3, Wang et al, 2020) is a 3D reference space is an average brain at 10um voxel resolution created from serial two-photon tomography images of 1,675 young adult C57Bl6/J mice. This is the online help for the BrainSpan Atlas of the Developing Human Brain web application. Here, we present the Allen Mouse Brain Common Coordinate Framework (CCFv3) as such a resource. Abstract. image1079×626 122 KB. CutNII Link . It is created from a 3D volumetric reference atlas, annotated symmetrically using image data averaged from 1,675 adult mouse brain specimens. The datasets contain a total of ~4 million cells passing rigorous quality-control (QC) criteria. These parcellations were drawn by Song-Lin Ding, and adapted from his prior 2D version of an adult human brain atlas. View expression data from different Jan 28, 2010 · The atlas also provides initial glimpses at the computational, database, imaging and informatics aspects of neuroanatomy which will see an increasing role in our appreciation of connectivity and organization of the brain. [All Cell Features] Search. May 7, 2020 · The CCFv3 reference brain is a 3D spatial template constructed as a population average of 1,675 young adult mouse brains imaged using serial two photon tomography (STPT) for the Allen Mouse Brain Connectivity Atlas (. The Brain Explorer 2 software is a desktop application for viewing the human brain anatomy and gene expression data in 3-D. Brodmann; Human Brain Atlas Guide; Nissl; Mouse Atlases; Adult, 3D Coronal; P56, Coronal; P56, Sagittal Allen Reference Atlas. Allen Human Brain Atlas. The Allen Developing Mouse Brain Atlas project surveyed gene expression in the brain beginning with mid-gestation through to juvenile and young adult. 738. Projection Mapping image data detailing axonal projections labeled by viral tracers Nov 27, 2012 · In the Allen Mouse Brain Atlas with the Brain Explorer 2 software, a fully interactive version of the Allen Reference Atlas in 3D can be viewed, along with gene expression data in 3D at 200-μm 3 resolution, along with expression data from multiple image series superimposed on each other in 3D. “In this regard, the Allen Human Brain Reference Atlas represents a further departure from the classical atlases in its innovative publication format,” says Patrick Hof, M. Through orthogonal views of the three standard planes (coronal, sagittal, horizontal) and a custom-angle slice cut through the volume, CutNII produces custom-angle atlas slices that match histological sections with non-standard cutting angles. To use in this manner, please click here. The Dataset The Allen Human Brain Atlas is a unique multi-modal atlas of the human brain, integrating anatomic and genomic information and coupled…. . The Allen Developing Mouse Brain Reference Atlases were designed to: 1) Allow users to directly compare gene expression patterns to an annotated developmental atlas. 1)1–9 (2006) Alternative Background Images; Cortex - Mod. About Neuroscience at the Allen Institute. (2017) Neuropathological and transcriptomic characteristics of the aged brain, Elife 6 doi: 10. How to: BrainSpan Atlas of the Developing Human Brain. 31126. The purpose of the atlas is to aid in the development of neuroscience research. Age. This 4D in situ hybridization atlas provides a framework to explore temporal and spatial regulation of gene expression in mouse brain for approximately 2,000 genes across seven stages of development. 7554/eLife. Atlas. org). How To Allen Brain Atlas API. Knowles, University of Southern California) and RC2MH089929 (PI: Nenad Sestan, Yale University) from the National Institute of Mental Health. Use Gene Search to find ISH data for a specific gene of interest [more] Use Correlation search to find genes with similar spatial expression profiles to a gene selected from Gene Search returns [more] Log (expression) color key: -1. John Wiley & Sons Inc. They are the Feb 15, 2009 · The Allen Reference Atlas: A Digital Color Brain Atlas of the C57BL/6J Male Mouse (John Wiley & Sons, Hoboken, New Jersey, USA, 2008). 4 mm intervals. , Ph May 7, 2020 · In a paper published today in the journal Cell, the Allen Institute mapmakers describe this cartographical feat — the third iteration of the Allen Mouse Brain Common Coordinate Framework, or CCFv3, a complete, high-resolution 3D atlas of the mouse brain. T. This is the online help for the ALLEN Reference Atlases and the web-based tools that can be used to access them. Brain Explorer® 3-D viewer. , 2015; Oh et al. Overview Cell Feature Search RNA-Seq Data Documentation Acknowledgements Help. Sep 21, 2023 · For the mouse, the most used volumetric reference atlas is the Allen Mouse Brain Atlas 12, which contains delineations of hundreds of structures of the adult mouse brain within a standardized Jan 11, 2020 · The Allen Human Reference Atlas - 3D is a parcellation of the adult human brain in 3D, labeling every voxel with a brain structure spanning 141 structures. Also, the high-resolution 2D ISH images using the Dec 8, 2023 · The Allen Institute has built a data-driven three-dimensional atlas of the adult C57Bl/6J mouse brain based on the ISH gene expression images of the Allen Mouse Brain Atlas. The AGEA feature (which stands for Anatomic Gene Expression Atlas) characterizes the multi Oct 16, 2020 · In recent years, the combination of whole-brain immunolabelling, light sheet fluorescence microscopy (LSFM) and subsequent registration of data with a common reference atlas, has enabled 3D visualization and quantification of fluorescent markers or tracers in the adult mouse brain. To accomplish this, we are leveraging advances in next-generation single-cell molecular profiling technologies developed through the BRAIN Initiative and at the Feb 1, 2015 · The center of the automated informatics pipeline is an annotated 3D reference space based on the C57Bl/6J mouse brain, the same brain specimen used for the coronal Allen Reference Atlas [7]. Each data set is processed through an informatics analysis pipeline The Allen Mouse Brain Connectivity Atlas is a mesoscale whole brain axonal projection atlas of the C57Bl/6J mouse brain. To create the original Allen Reference Atlas, a wild-type brain was sectioned to span nearly the complete rostral-to-caudal range, resulting in 528 Nissl About the Allen Mouse Brain Connectivity Atlas. 106 coronal sections at 0. Using multimodal reference data, the entire brain parcellated directly in 3D, labeling every voxel with a brain Annotations (Reference) Selection Color; Outlines; 15 pcw, Whole Brain; Neuroanatomical Guides; Human Brain Atlas Guide Nov 21, 2019 · What is the Allen Mouse Common Coordinate Framework? Allen Mouse Brain Common Coordinate Framework (CCFv3) is a 3D reference space by creating an average brain at 10um voxel resolution from serial two-photon tomography images of 1,675 young adult C57Bl6/J mice. 1: Transcriptomic cell-type taxonomy of the whole mouse brain. In 2021, we launched the Allen Institute Mouse Brain (27284) Mouse Brain Reference Data (1093) Mouse Cell Types (1931) Acknowledgements of Allen Mouse Brain Atlas collaborators. Jan 10, 2024 · DEVELOPING HUMAN REFERENCE ATLASES Reference Atlases Reference Atlas Viewing Tools Reference Atlases To complement the RNA-Seq and microarray gene expression data, reference atlases were created at three developmental stages; 15 pcw, 21 pcw and 34 years. Projection Mapping image data detailing axonal projections labeled by viral tracers Explore the interactive atlas of the human brain with high-resolution images, annotations and tools. The integrated transcriptomic taxonomy Dec 8, 2023 · February 1, 2024. Anatomical trajectories throughout the brain were mapped into a common 3D space using a standardized platform to generate a comprehensive and quantitative database of inter-areal and cell-type-specific projections. 3) Serve as a neuroanatomical foundation for informatics-based analysis tools. The reference atlas are full-color, high-resolution, web-based digital brain atlases accompanied by a systematic, hierarchically organized The Allen Human Reference Atlas – 3D, 2020 is a 3-dimensional annotated parcellation of the adult human brain. Filter by Gene Name, Gene Symbol or Entrez Gene ID. May 14, 2020 · Successful integration of these data requires a standard 3D reference atlas. The Seattle Alzheimer’s Disease Brain Cell Atlas (SEA-AD) consortium strives to gain a deep molecular and cellular understanding of the early pathogenesis of Alzheimer’s disease. It is possible to use manually drawn regions-of-interest (ROIs) or other brain RNASeq :: Allen Brain Atlas: Cell Types. View gene expression data in 3-D: inflated cortical surfaces are colored by gene expression values of The Allen Mouse Brain Atlas is a comprehensive genome-wide map of the adult mouse brain that reveals where each gene is expressed. We constructed an average template brain at 10 μm voxel resolution by interpolating high resolution in-plane serial two-photon tomography images with 100 μm z-sampling from The Allen Reference Atlas 3D space has been updated since the first version of AGEA was published in 2008. The framework is meant to be a reference point for the neuroscience community, its The Brain Explorer 2 software is a desktop application for viewing the developing mouse brain anatomy and gene expression data in 3-D. It combines neuroimaging with cellular level resolution histological analysis and expert structural mapping. , 2014; Ragan et al. It provides spatial context for gene expression in the Allen Human Brain Atlas and the BrainSpan Atlas of the Developing Human Brain. A weighted and directed interareal connectivity Microarray Data :: Allen Brain Atlas: Human Brain. They are the spatial framework for datasets such as in situ hybridization, cell projection maps, and in vitro cell characterization. "The Allen Reference Atlas SET": contains the most frequently annotated coronal sections in the brain in unprecedented anatomical detail; utilizes About the Allen Mouse Brain Connectivity Atlas. A Forum post About Neuroscience at the Allen Institute. A set of high resolution digital reference atlases have been created to provide neuroanatomical context to in situ hybridization, microarray, RNA-sequencing and axonal projection data. 0. 0: 522: January 26, 2024 Map cells to their cell type. Search the data. Also, the high-resolution 2D ISH images using the 3d Viewer :: Allen Brain Atlas: Mouse Connectivity @description The Interactive Atlas Viewer is an anatomical reference atlas that illustrates the adult mouse brain in coronal and sagittal planes of section. Microarray ISH Data MRI Download Brain Explorer Documentation Help. Compare different brain regions and visualize the projection patterns. The BrainSpan atlas is a foundational resource for studying transcriptional mechanisms involved in human brain development. Allen Human Brain Atlas at 100 micron resolution; Max Planck Zebrafish Brain Atlas at 1 micron resolution; Enhanced and Unified Mouse Brain Atlas at 10, 25, 50 and 100 micron resolutions; Smoothed version of the Kim et al. Key features include an “all genes, all structures” RNA microarray survey that is spatially mapped to an MRI reference space, in situ hybridization image data at cellular resolution for selected genes in targeted brain regions, and an annotated human Jan 5, 2024 · Reference Datasets Translation Between the Adult and Developing Mouse Ontologies Reference Atlas Viewing with Gene Expression Data Structure Ontology Ontology Levels Reference Atlas Viewing Tools Reference Datasets To provide a neuroanatomical framework for gene expression data, the Allen Developing Mouse Brain Reference Atlas was created with the expertise of Professor Luis Puelles, M. Enter Gene Name, Gene Symbol, NCBI Accession Number or Entrez Gene ID. Reference Atlas Viewing Tools. Anatomic reference atlas. Jun 10, 2019 · The brain sections were overlaid by the Allen developing mouse brain reference atlas, with each region being assigned a unique colour code. This resource provides users with a meticulously selected and complied collection of key information from the Web-based Allen Brain Atlas, the online mouse brain anatomical atlas and gene expression database (www. This is the online help for the Allen Human Brain Atlas web application. We have transformed the coordinates that you passed into this page to the corresponding point in the new reference atlas space. The atlas is separated into four key features: In Situ Hybridization (ISH) Data includes image data with cellular level resolution. SvenOtto January 8, 2024, 5:13pm 1. Mouse Differential Search. 624. Figure 1. The BrainSpan Atlas of the Developing Human Brain is designed as a foundational resource for studying transcriptional mechan…. The reference atlases are neuroanatomical guides to accompany Allen Institute data and are also useful as stand-alone resources. These anatomical reference atlases illustrate the adult mouse brain in coronal and sagittal planes of section. Differential Search. 1. One key advantage to MapMyCells is scale: using our cloud-based Brain Knowledge Platform and reference datasets with millions of cells, researchers can provide up to 327 million cell-gene pairs from their own data, which is a huge leap forward for working with whole-brain datasets. Nov 27, 2012 · In the Allen Mouse Brain Atlas with the Brain Explorer 2 software, a fully interactive version of the Allen Reference Atlas in 3D can be viewed, along with gene expression data in 3D at 200-μm 3 resolution, along with expression data from multiple image series superimposed on each other in 3D. Downloading Atlas Images And Graphics. [more] The Allen Brain Explorer (beta) is an application that allows users to browse multimodal datasets in an annotated 3D spatial framework. Please update your link or bookmark to use the new coordinates. Study: Mouse Brain. The BrainSpan Reference Atlases are full-color, high-resolution, Web-based digital brain atlases accompanied by a systematic, hierarchically organized taxonomy of developing human brain structures. ISH Data: Reference Atlas: AGEA: Brain Explorer: Related Studies Sleep; Mouse Strains; Documentation: Help Jan 23, 2020 · Many people find the digital reference atlases generated by the Allen Institute to be useful tools for educational, programmatically-accessible visualization and analysis. The Allen reference atlas: A digital color brain atlas of the C57Bl/6J male mouse. MapMyCells Aging, Dementia and Traumatic Brain Injury Dec 13, 2023 · Fig. Explore the mouse brain connectivity in 3D with this interactive tool. Gene Search. “It is the only brain atlas to date to combine the rigor of a peer The Brain Explorer 2 software is a desktop application for viewing the human brain anatomy and gene expression data in 3-D. 7, (suppl. The core of the database is a Nissl-stained reference atlas of the brain accompanied by in situ hybridization data for essentially the entire mouse genome. Advanced search and visualization tools. [3] The mouse brain atlas was the original project of the Allen Brain Atlas and was finished in 2006. February 9, 2024. View gene expression data in 3-D: inflated cortical surfaces are colored by gene expression values of Dec 8, 2023 · This is the online help for the ALLEN Mouse Brain Atlas web application. It can also be utilized in the High Resolution Image Viewer to visualize the reference atlas side by side with and ISH image series. As the Allen Institute and its collaborators continue to add new modalities, species, and insights to the ABC Atlas, this groundbreaking platform will keep growing, opening up endless possibilities for groundbreaking discoveries and breakthroughs in neuroscience. As of June 2024 the atlas features Jun 4, 2019 · A reference adult mouse T2-weighted (T2-w), DTI and rs-fMRI data set acquired at 9. Are these available? This post explains how to produce printable versions of the human and mouse brain reference atlases. 3. How to: Allen Human Brain Atlas. A genome-wide, high-resolution atlas of gene expression throughout the adult mouse brain. A three-dimensional digital The Mouse Whole Brain Atlas is a high-resolution transcriptomic and spatial cell-type atlas across the entire mouse brain, integrating several whole-brain single-cell RNA-sequencing (scRNA-seq) datasets. Navigate the high-resolution 2-D ISH images using the 3-D model. February 22, 2024. atlas-reference-maps. To find gene expression data, search can be performed using Gene Search, Differential Search, Fine Jun 28, 2024 · 1035. Dec 8, 2023 · This is the online help for the ALLEN Reference Atlases and the web-based tools that can be used to access them. For example, when using the Allen Reference Atlas – Developing Mouse Brain, use only the reference atlas citation below and do not also cite the Allen Developing Mouse Brain Atlas as the source. mouse reference atlas at 10, 25, 50 and 100 micron resolutions; Gubra's LSFM mouse brain atlas at 20 micron resolution When citing anatomic reference atlas content without additional data, cite the anatomic reference atlas specifically. 4T is available for testing purposes 2. ). CutNII provides visualization and slicing of 3D isotropic image data as well as various atlases. 5. Allen Developing Mouse Brain Atlas. Using the Brain Explorer 2 software, you can: View a fully interactive version of the Allen Developing Mouse Brain Reference Atlas in 3-D at 7 developmental timepoints. Structures And Ontologies. This database is freely available at the Allen Institu … Dec 8, 2023 · Mac. • View gene expression data in 3-D at 200 µm 3 resolution. Alternative Background Images; Cortex - Gyral; Cortex - Mod. Allen Mouse Brain Atlas These anatomical reference atlases illustrate the adult mouse brain in coronal and sagittal planes of section. Brodmann; Cortex - Gyral; Human Brain Atlas Guide; Nissl; Mouse Atlases; Adult, 3D Coronal; P56, Coronal; P56, Sagittal The Allen Reference Atlas 3D space has been updated since the first version of AGEA was published in 2008. The average was created from tissue autofluorescence detected in the red channel. Feb 22, 2019 · Citation also must include the name of the Allen Institute. This division is in a 16-year phase focused on multimodal characterization of brain cell types. Gerstein); the Zilkha Neurogenetic Institute of the Keck School of Medicine of Allen Brain Cell (ABC) Atlas Reference Atlases This is the online help for the ALLEN Reference Atlases and the web-based tools that can be used to access them. The atlas was recently published in an unprecedented 350 page, stand-alone issue of the Journal of Comparative Neurology. The Aging, Dementia and TBI Study was made available online in 2016, with a corresponding publication that describes the project: Miller J. But some people want to use a ‘classically printed’ atlas, on paper or in a PDF. View gene expression data in 3-D at 200 μm 3 resolution. Oct 14, 2009 · The Allen Brain Atlas, a Web-based, genome-wide atlas of gene expression in the adult mouse brain, was an experiment on a massive scale. Today, the common coordinate framework version 3 developed by the Allen’s Institute of Brain Science (AIBS The Allen Brain Cell (ABC) Atlas is a platform for visualizing multimodal single-cell data across the mammalian brain and aims to empower researchers to explore and analyze multiple whole-brain datasets simultaneously. D. The Allen Developing Mouse Brain Atlas includes a full-color, high-resolution anatomic reference atlas at seven timepoints accompanied by a systematic developmental taxonomy of mouse brain structures. Brodmann; Human Brain Atlas Guide; Nissl; Mouse Atlases; Adult, 3D Coronal; P56, Coronal; P56, Sagittal About the Allen Mouse Brain Atlas. The Allen Human Brain Atlas is a unique multi-modal atlas that maps gene expression across the healthy human brain. In 2013, the reference atlas was updated to provide a deeper level of annotation. a, Left, the transcriptomic taxonomy tree of 338 subclasses organized in a dendrogram (10xv2: n = 1,699,939 cells; 10xv3: n Allen Mouse Brain Common Coordinate Framework (CCFv3, Wang et al, 2020 ) is a 3D reference space is an average brain at 10um voxel resolution created from serial two-photon tomography images of 1,675 young adult C57Bl6/J mice. gc dk yr or kq kx cs zu iw zw

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